Training

The Bioinformatics team provides ad-hoc training for biologists as well as training courses covering topics such as ChIP-seq and RNA-seq analysis, data visualisation and R/Bioconductor programming.

All course material is made publicly available and the Bioinformatics Resource Center will reguarly run training for basic ATAC-seq, ChIP-seq and RNA-seq analysis, reproducible research in R and visualizing data in genome browsers. For details on upcoming courses see our upcoming training or contact us (brc@rockefeller.edu).

As well as training in Bioinformatics methods, the Bioinformatics team can offer advice on the use of local compute resources (i.e. best practice in using R in cluster compute environment).

Daily updates to our training material can be found at http://rockefelleruniversity.github.io/

Videos

We try to record all our training sessions. The aim is to create a resource that allows people to review the material at their own pace, or see what we cover in sessions they can't make. All videos are hosted on our YouTube channel here

Upcoming training

We will run regular training on R, reproducible research, visualising data in genome browsers and analysis of RNA-seq/ChIP-seq using R and Bioconductor
To book a place on one of these courses please contact us (brc@rockefeller.edu)
Material linked below is for reference and example only.
Material to be used for course may be updated up until the day of the course.
NOTE Material is public and free for review. To use this material in your own training contact the Head of Bioinformatics (Thomas Carroll - thomas.carroll@rockefeller.edu)

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Course Material Dates Availability
Course Work - 1 Link TBD TBD 0
Introduction to the Bioinformatics Resource Centre Link TBD TBD 11
Introduction to Spring 2018 Bioinformatics Course Link TBD TBD 11
Introduction to Spring 2021 Bioinformatics Course Link TBD TBD 11
Intro To R Link TBD TBD 1
Plotting In R Link TBD TBD 1
Tidyverse abridged Link TBD TBD 1
Reproducible R Link TBD TBD 1
Genomic Data Link TBD TBD 1
IGV Link TBD TBD 1
Introduction to Bioconductor Link TBD TBD 1
ChIPseq in Bioconductor Link TBD TBD 1
ATACseq in Bioconductor Link TBD TBD 1
Genomic Variants in Bioconductor Link TBD TBD 1
RNAseq in Bioconductor Link TBD TBD 1
Visualising genomics data in R and Bioconductor Link TBD TBD 1
Crispr screening in R and Bioconductor Link TBD TBD 1
Genome Assembly Link TBD TBD 1
scRNAseq Link TBD TBD 1
Course Material Dates Availability
Getting tidier with TidyR Link TBD TBD 1
Genomic Heatmaps with profileplyr and Deeptools Link TBD TBD 1