The Bioinformatics team provides ad-hoc training for biologists as well as training courses covering topics such as ChIP-seq and RNA-seq analysis, data visualisation and R/Bioconductor programming.
All course material is made publicly available and the Bioinformatics Resource Center will reguarly run training for basic ATAC-seq, ChIP-seq and RNA-seq analysis, reproducible research in R and visualizing data in genome browsers. For details on upcoming courses see our upcoming training or contact us (email@example.com).
As well as training in Bioinformatics methods, the Bioinformatics team can offer advice on the use of local compute resources (i.e. best practice in using R in cluster compute environment).
Daily updates to our training material can be found at http://rockefelleruniversity.github.io/
We try to record all our training sessions. The aim is to create a resource that allows people to review the material at their own pace, or see what we cover in sessions they can't make. All videos are hosted on our YouTube channel
We will run regular training on R, reproducible research, visualising data in genome browsers and analysis of RNA-seq/ChIP-seq using R and Bioconductor
To book a place on one of these courses please contact us (firstname.lastname@example.org)
Material linked below is for reference and example only.
Material to be used for course may be updated up until the day of the course.
NOTE Material is public and free for review. To use this material in your own training contact the Head of Bioinformatics (Thomas Carroll - email@example.com)
|Course Work - 1||Link||TBD||TBD||0|
|Introduction to the Bioinformatics Resource Centre||Link||TBD||TBD||11|
|Introduction to Spring 2018 Bioinformatics Course||Link||TBD||TBD||11|
|Introduction to Spring 2021 Bioinformatics Course||Link||TBD||TBD||11|
|Intro To R||Link||TBD||TBD||1|
|Intro To R (Abridged)||Link||TBD||TBD||1|
|Plotting In R||Link||TBD||TBD||1|
|Introduction to Bioconductor||Link||TBD||TBD||1||ChIPseq in Bioconductor||Link||TBD||TBD||1||ATACseq in Bioconductor||Link||TBD||TBD||1||Genomic Variants in Bioconductor||Link||TBD||TBD||1||RNAseq in Bioconductor||Link||TBD||TBD||1||Visualising genomics data in R and Bioconductor||Link||TBD||TBD||1||Crispr screening in R and Bioconductor||Link||TBD||TBD||1||Genome Assembly||Link||TBD||TBD||1|
|Getting tidier with TidyR||Link||TBD||TBD||1|
|Genomic Heatmaps with profileplyr and Deeptools||Link||TBD||TBD||1|