Thomas Carroll
February 2021
(experience)
(experience)
(experience)
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What types of analysis?
What types of analysis?
Training
Analysis
Pipelines &
Software
Training
Samplesheet template - NGSpipeR
Text
RNA-seq- Splicing test set
Ptbp1 knock down (Cancer Cell 2018)
HTML output
Differential expression and
functional enrichment
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Large component of work is unique analysis or combinations of analysis tailored to the hypothesis under investigation.
(Yang R et al, 2020; Xi L et al, 2020; Jove V et al 2020)
Training
Analysis
Pipelines &
Software
Training
Analysis
Pipelines &
Software
Training
Analysis
Pipelines &
Software
Training
Intro to R
Genomic
Files
RNA-seqÂ
Analysis
Alignments
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Automation and testing
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For more information
Please email us at
brc@rockefeller.edu
http://bit.ly/brc_training
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All these slides are on our website
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Office of the CIO
Anthony Carvalloza
Genomics Resource Centre
Connie Zhao
Sophie Huang
Bioimaging Resource Center
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Reference Genome Resource Center
Olivier Fedrigo
Giulio Formenti