Spring 2018 Bioinformatics course, Rockefeller University
Overview
Who are we?
What is this course?
What is the end goal?
Who are we?
Bioinformatics Resource Centre
Tom Carroll
Ji-Dung Luo (late March)
Collaborators (Outside RU)
Mark Dunning (Cambridge University, CRUK)
MRC LMS (Imperial College London)
Collaborators (Rockefeller University)
​Wei Wang
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What is the course?
Introduction in NGS analysis in R/Bioconductor.
Introduction R
NGS datatypes
Working with NGS data.
ChIPseq, ATACseq and RNAseq basics.
Visualising genomics data.
Culmination of R and Bioconductor training with updates to latest toolsets.
Cambridge University.
Imperial College London.
MRC LMS and MRC CSC.
Goals
Introduce concepts of processing and analysis of High Throughout Sequencing Data analysis.
Gain experience working with genomics data in R.
Provide reference material for HTS analysis at Rockefeller University.
Much of our HTS pipeline use R in processing, analysis and reporting.
R objects are saved from pipeline for use in downstream analysis
Goals - The Manual