Course Overview
Course Integrity
This course is compiled automatically on 2021-01-05
The course is tested and available on MacOS, Windows and Ubuntu Linux for R 4.0
Overview
?? This Section is used to build the course website ??
?? What is this course about??
?? Break down of course structure. You can look here for guidance: https://rockefelleruniversity.github.io/Intro_To_R_1Day/??
Course material and exercises are available to view as rendered HTML at https://rockefelleruniversity.github.io/RU_Course_template/. All material is available to download under GPL v2 license.
Setting up
System Requirements
Install R
R can be installed from the R-project website.
The R website can be found here http://www.r-project.org/.
The download links and associated installation instructions for multiple platforms can be found below provided by Revolution Analytics. https://cran.revolutionanalytics.com
Direct downloads for main platforms of R 4.0 can be found below
Install RStudio
RStudio can be installed from the RStudio website.
RStudio can be downloaded for all platforms at the link below
https://rstudio.com/products/rstudio/download/
Install required packages
From the course package
install.packages('BiocManager')
BiocManager::install('RockefellerUniversity/RU_course_template',subdir='MyCoursePackage')From CRAN and Bioconductor
install.packages('BiocManager')
BiocManager::install('methods')
BiocManager::install('ggplot2')
BiocManager::install('rmarkdown')
BiocManager::install('rio')
BiocManager::install('knitr')
BiocManager::install('testthat')
BiocManager::install('yaml')The Presentations
?? My course name?? , Session 1
??What am I focusing on in this section. Bullet point lists are good??
- Course content
- Building courses
- Making it look nice
Links to presentations:
The html slide presentation can be found at this link Slide
The single page html presentation can be found at this link Single Page
The code use in the presentations can be found at R code
?? My course name?? , Session 2
??If you have more sections then do this again. what is session 2 about? keep adding more files if needed??
- Course content
- Building courses
- Making it look nice
Links to presentations:
The html slide presentation can be found at this link Slide
The single page html presentation can be found at this link Single Page
The code use in the presentations can be found at R code
Getting help
Course help
For advice, help and comments for the material covered in this course please contact us at the issues page associated to this course.
The link to the help pages can be found here
General Bioinformatics support
If you would like contact us about general bioinformatics advice, support or collaboration, please contact us the Bioinformatics Resource Center at brc@rockefeller.edu.